Manga with Mystery genre:

Dennou Alice to Inaba-kun

Shuuichi Inaba is a student of a special high school for young prodigies and one of the users of the newest and most popular application called 'Alice in Cyberland' - an app with an AI that enables its users to talk to them as with any other human. When some of the students of his high school start to get attacked by a mysterious culprit, Shuuichi is determined to find out who it is. In his investigation, he stumbles upon 'Alice' - a special kind of program, which, in return for helping him with the case, demands only to know something he would usually never tell anyone - his biggest and deepest secret.

3.4 (14)

Chapter 10

8 years ago
Sci-Fi Romance Drama Mystery
The Angel of Elhamburg

Madeth and Lalvan successfully obtain a castle but it seems that there is a rumour going on around that says the castle is haunted by a spirit. The spirit is actually an angel that blesses kings that are currently ruling the land of good fortune and that he will be loved by all the people of the land. He will also be most likely ruling the land for a long time. However, one day, the appearance of a lady has stirred conflict between the two good friends. What will happen to the relationship of Madeth and Lalvan? [Official English](https://yenpress.com/9780316340465/the-angel-of-elhamburg/)

3.7 (54)

Chapter 5

8 years ago
Thriller Historical Psychological Romance Comedy Philosophical Drama Slice of Life Mystery Tragedy
0-Noushiya Minato

Minato Kujou is a cynical and sharp tongued young man who has no spiritual abilities at all. He is looked down upon by others in the spiritual profession and referred to as the "Zero Ability Individual". Despite his reputation, he has a surprising way of defeating the monsters known as "specters".

Chapter 6

8 years ago
Drama Mystery
Soil

Something strange is going on in "Soil New Town." The sudden disappearance of a seemingly normal family leads the two detectives Yokoi and Onoda to the idyllic town in the middle of nowhere. What looks like a routine case at first quickly turns into a complex and deadly riddle where nothing is what it seems to be. Will the two desperate investigators manage to solve the mystery before it's too late?

4.2 (229)

Chapter 89

8 years ago
Psychological Crime Philosophical Drama Horror Slice of Life Mystery
Kimi ga Uso o Tsuita

Saki has always hated liars, ever since her father left her family when she was young. Now a student in high school, Saki nearly dies in a car crash, and wakes up to find that she has a new ability… the ability to see when people are lying. Saki comes to realize that there are liars all around her…

3.5 (85)

Chapter 12

8 years ago
Psychological Romance Drama Mystery
Maybe Friday

On a rainy Friday, Yayoi makes an effort to go to the store to get a new pair of glasses. With her poor eye sight she ends up bumping into a guy who is soaking wet and this guy ends up helping her get to the store. He runs off quickly and Yayoi is unable to thank him. From that day onwards she labels him as Mr. Friday and has him constantly on her mind. Now her life is filled with wonder and questions as she fumbles to try and find the truth about who Mr. Friday might really be. Can it really be someone from her school? Also includes a short story, P.M. Dream, about a teenage girl who is considered to be very much like a cool guy. She is the daughter of the owner of a boarding house, in which the bearded Kuma-san boards.

3.0 (13)

Chapter 5

8 years ago
School Life Romance Comedy Drama Slice of Life Mystery
Sugar Dark: Umerareta Yami to Shoujo

In an era filled with war, Private Muol Reed is sentenced to death for murdering his superior and is labeled “Criminal No. 5722”. While being led to his grave, a mysterious person decides to take him in… ___ **Character Designer:** [mebae](https://mangadex.org/author/4a41ace8-21a3-4ace-bc47-08755774a46e)

4.0 (207)

Chapter 19

8 years ago
Action Romance Drama Horror Mystery
Poppys Wish

Poppy is an AI created by Takashi, a scientist and a recluse. With Poppy's single wish, the world will change.

3.9 (81)
Sci-Fi Comedy Mecha Drama Mystery
Cockroach Buster

Humans may be considered at the top of the food chain, but when people are in the presence of cockroaches, they cower in fear. Who can they turn to when faced with these insects? The Gokiburi Busters, who have yet to fail to eliminate a threat!

4.2 (440)
Action Comedy Adventure Drama Horror Mystery Tragedy
Shikou Shounen

A series of loosely-connected vignettes, each lead to the next by a stray thought. A young hit-man chased from his home; a dropped key to a bloody room; a meat-locker to hide a corpse; the watchful eyes of crows; a criminal's chance at salvation; the sight of music in the air. Where will this story take you, and in what place will it end?

3.9 (21)

Chapter 12

8 years ago
Psychological Slice of Life Mystery Tragedy
[zion]

Judges are the messengers of the Central Government, sent out to punish delinquent cities. They have the ability to control programmed "seeds", causing explosive growth. After a disease breaks out among the "Children of Babel", those Judges who're given power through Central's research, Central requires the data of a natural Judge like Sion. However, Central is also interested in the legend of the "Heavenly City", which Sion is named after; what could their true purpose be?

4.0 (4)

Chapter 18

8 years ago
Drama Mystery
Gasaraki

In ancient Japan the Gowa family created a demonic Armor in order to defeat their enemies. Hundreds of years later this armor is exploited by the Gowa in the development of Tactical Armor for military usage and the usurpation of Japan.

Chapter 10

8 years ago
Historical Action Mecha Drama Mystery
Tatoe Hai ni Nattemo

[**Series is cancelled due to author's death**](https://www.animenewsnetwork.com/news/2019-02-27/though-you-may-burn-to-ash-manga-kakashi-oniyazu-passes-away/.143962) For his beloved younger sister's treatment, Shinomiya Ryouma is working frantically to raise a billion yen while going to high school. One day, a mysterious woman asks him, "Can you put your life on the line for what you desire?" and after receiving a ticket from her, an accident befalls him! When he wakes up, he finds he's turned into a girl and what's more, he's participating in a "game" where a win means he can reverse his fate but a loss means he'll die instantly!

3.7 (212)

Chapter 11

8 years ago
Psychological Drama Horror Mystery
Youkai Ningen

A boy wakes up in a strange room and finds a girl passed out with him. They find out they both have weird collars on. The boy has a phone which seems to be connected to the people behind this. They want them to do what!?

2.9 (46)

Chapter 9

8 years ago
Sci-Fi Psychological Drama Horror Mystery
Kakegurui - Compulsive Gambler

Hyakkaou Private Academy. An institution for the privileged with a very peculiar curriculum. You see, when you're the sons and daughters of the wealthiest of the wealthy, it's not athletic prowess or book smarts that keep you ahead. It's reading your opponent, the art of the deal. What better way to hone those skills than with a rigorous curriculum of gambling? At Hyakkaou Private Academy, the winners live like kings, and the losers are put through the wringer. But when Yumeko Jabami enrolls, she's gonna teach these kids what a high roller really looks like! ___ Placed 3rd in the 2nd Next Manga Awards (2016). ___ **Official English Volumes:** [Yen Press](https://yenpress.com/series/kakegurui-compulsive-gambler) **Original Concept:** [Dominium ~The Gambling Legend Of Extremely Colorful Girls~](http://ushimilk.web.fc2.com/index.html)

4.1 (511)

Chapter 9.5

8 years ago
Thriller Psychological Comedy Drama Mystery
Fukashigi Philia

Their city is filled with criminals and three incredible high schoolers. Yugo, Rikiya and Tasuku are determined to clean up the city with whatever means necessary, even if that means using violence. During a typical night of wiping out gangs, Tasuku comes across a beautiful girl held prisoner. She helps him survive what would have been a mortal wound by allowing him to see the future. Tasuku takes her home where he finds that her name is Noa, she doesn’t speak at all, and has no memory. Even more fascinating to Tasuku, she bears the same tattoo as the person he has spent years searching for.

3.8 (81)

Chapter 16

8 years ago
Action Romance Mystery
Anonymous

There is a special organization known as "anonymous" which takes children and raises them without names, feelings or souls. Then it sends them out to kill. Can emotions get through to these cold-hearted killers? A sequence of stories that deal with a few of the organization's members.

3.8 (23)

Chapter 6

8 years ago
Historical Action Psychological Romance Drama Mystery
Haru no Houtai Shoujo

Haru, a fun, lovable, easygoing guy, has a problem: he can't control his ability to produce flames from his hand. With his girlfriend Natsu nearly burnt to death and the locals concerned about a serial arsonist, what will happen to this human torch?

3.8 (491)

Chapter 17

8 years ago
Psychological Romance Drama Mystery
Tokyo Ghoul (Oneshot)

The pre-serialization one-shot of Tokyo Ghoul, with Kaneki living as a ghoul… --- - **Won the Young Jump 113th Grand Prix Award in 2010**

Action Psychological Crime Drama Horror Mystery
Our List of Affections

Mizuhara Ritsu loves both the 2D beauties of eroge and elementary school students. Also, his friend Bungo is jealous of how he seems to be surrounded by cute girls–there's his little sister Miri, his tsundere childhood friend Akari, and kuudere Hatori. One day, Bungo tells Ritsu about an anonymous blogger who writes about the future, and whose vague online self-description seems to match Ritsu. While initially assuming it to be a prank, Ritsu ends up letting his actions be guided by the blog's horoscope-like hints for the upcoming day…

3.5 (155)

Chapter 19

8 years ago
Sci-Fi Psychological Romance Comedy Drama Fantasy Mystery Tragedy
Doubt!

Ichiru Kanzaki is given an offer he can't refuse: to clear his entire debt, he has to enroll in the high school his father works at and track down his father's illegitimate daughter, whom he has never met. But which girl is she?

3.7 (121)

Chapter 15

8 years ago
Romance Comedy Mystery
Bloody Maiden ~Toomarimiki no Shima~

Onitsuka Miaki, a freshman from Fujimigahara Girls' Academy Naginata club, is going to a training camp on a remote island that is owned by her captain, Igasaki Kotone, along with 11 members. Legends say that the remote island is a place where the worst bandits live who have hidden a national treasure beneath the island. Everything is still normal until one of their members gets killed. Their life-threatening experience begins then.

2.7 (46)

Chapter 11

8 years ago
Historical Psychological Drama Horror Mystery Tragedy
The Boat of the Canaries

Yuri is just a normal girl in high school: she loves hanging out with her friends, she has dreams, and she has worries. But one day, she wakes up in a strange forest she's never seen before beside a man named Chihiro. As the two of them learn more about the place they suddenly find themselves in, and the oddly real dream they had of being abducted by aliens, the dark secret of where they are and what has happened to them will begin to unfold. A 1-volume series.

4.1 (143)

Chapter 6

8 years ago
Sci-Fi Psychological Drama Mystery Tragedy
Suicide Circle

Jisatsu Circle is a manga based on a movie of the same title, written and directed by Sion Sono. At first, the manga was intended to follow the same story, but Sion Sono asked Usamaru Furuya to adapt his own story to it, which resulted in a plot much easier to understand. The story begins with the same opening scene, where 54 girls commit suicide by jumping in front of a moving train. However, one girl survives (Saya Kota) and opens another Suicide Club, with other victims. Her best friend, Kyoko, fears for Saya's future and begins to search for the strange secrets surrounding the Suicide Club to try and save Saya and the other girls from committing such a tragedy again.

3.5 (342)

Chapter 6

8 years ago
Psychological Drama Horror Slice of Life Mystery Tragedy