Manga with Mystery genre:

Hero-san to Moto Onna Kanbu-san

When the villainess Honey Trap defeats the superheroine Rapid Rabbit, she sees her nemesis’ face for the first time…and falls head over heels in love! Refusing to kill Rapid Rabbit, Honey Trap is cast out of Antinoid, an evil organization with plans of world domination. Luckily, a kind soul takes her in: Rapid Rabbit herself! Now Honey Trap and Rapid Rabbit have teamed up to take on Antinoid. Can Honey Trap defeat her old colleagues and seduce the heroine at the same time? --- **Links:** - [Author's Twitter](https://twitter.com/sometime1209)

4.2 (2478)

Chapter 26

3 years ago
Action Comedy Superhero Girls Love Slice of Life Mystery
Henjin Tantei Emu

The strange adventures of two English friends who get themselves caught up in odd occurances. Rudy, the owner of a furniture store, comes to his friend Em, an eccentric freelance detective, with help for a situation he's roped himself into. Em makes things difficult, but the mystery is solved through his genius. Rudy can't shake his prices off though, and ends up relying on him for future shenanigans.

Chapter 7

3 years ago
Comedy Drama Slice of Life Mystery
Mouryou no Hako

Right after the war, Showa era in Japan. Kusumoto Yoriko and Yuzuki Kanako who attend an all girls school plan to take the last train to go to the lake. However, Kanako ends up getting run over by the train. Tokyo Metropolitan Police Department's Detective Kiba who happened to be there when it happened, is asked to watch the confused Yoriko. Kiba goes with the worried Yoriko to the hostpital Kanako is taken to, and there Kiba meets a woman who calls herself Kanako's sister; Yuzuki Youko. That happened to be the actress Kiba had been admiring, Minami Kinuko. An adaptation of Kyougoku Natsuhiko's novel. - Part 1: Ubume no Natsu - Part 2: Mouryou no Hako - Part 3: Kyoukotsu no Yume - Part 4: Jorougumo no Kotowari - Side Story: Hyakki Tsurezure Bukuro

4.2 (74)

Chapter 10.3

3 years ago
Historical Horror Mystery
Nusutto

For Nusutto, every day is a new opportunity to be his name, a thief. With his partner Scotts and surrogate daughter Chiko, Nusutto gets into far-out gag-filled situations and hijinks. Serialized in Weekly Shonen Jump, it ceased publication after 17 chapters, likely due to plagiarism of characters, style, and overall premise from Monkey Punch's Lupin III.

3.3 (4)

Chapter 2

3 years ago
Police Action Comedy Crime Adventure Drama Slice of Life Mystery
Shingetsutan Tsukihime

The story follows Tohno Shiki, a teenage boy who, after a near-fatal accident in his childhood, gained the mysterious power to perceive lines covering everything around him. When he cuts along these lines, whatever it was immediately falls apart with a clean cut; in other words, killing it. He would have quickly gone insane from living in a world that could fall apart so easily, had it not been for a wandering self-proclaimed magician who gave him a pair of glasses that blocked his unnatural perception when worn. Soon afterwards, he was disinherited from his family and sent to live with some relatives. For eight years he lived a normal life, hiding his special eyes, until one day he receives a letter inviting him to come back home. Shiki suddenly becomes caught up in a strange and life-threatening series of events, ones that are somehow linked to his childhood accident and a forgotten past… Adaptation of the visual novel Tsukihime by Type-Moon.

4.4 (1929)

Chapter 71.9

2 years ago
Thriller Action Romance Drama Horror Fantasy Mystery Tragedy
Kare to Obake to Renai Shousetsuka

Maeda Jun is an author who likes peace and tranquility. While walking through a cemetery at night, thinking about the 'cute love' that his readers are after, he was possessed by a spirit. Kawakami Yukio is a deliveryman who noticed the spirit possessing Maeda but kept quiet thinking it had nothing to do with him. Maeda, still unaware of his spirit passenger, goes out into the night for a walk once again. There in the darkness his gaze is caught by a woman dancing alone. But she has a secret…

3.4 (51)

Chapter 9

3 years ago
Psychological Romance Boys Love Fantasy Slice of Life Mystery
The Jungle Kingdom

George and Mr. Sandwich go on location to film in the ruins of a kingdom in Africa that existed 3,000 years ago. Also includes ["The Secret Base of the Shari River"](https://www.mangaupdates.com/series/12n8t9c/chari-gawa-no-himitsu-kichi): Frank Allen and his nephew John Holcan go in search of a golden statue located in the upper reaches of the Shari River. --- **Volume 138 of the Osamu Tezuka Complete Works**

3.7 (9)

Chapter 2

3 years ago
Animals Survival Aliens Thriller Action Psychological Comedy Adventure Drama Fantasy Slice of Life Mystery
Oz

On the 15th of October 1990, World War III breaks out. It only lasts for 40 minutes, but industrial establishments were nearly wiped out by the 1000 megatons of nuclear weapons used in the war. The Earth was then cloaked by in a nuclear winter which lasted for 6 months, and all the grain plants died. Each government fell into anarchy and transport and communication networks could not be restored easily. Soon, declarations of state establishment from the citizens in various areas came one after another, and America was split into 6 parts, adding other unapproved small states, it was divided into more than 20 countries. The story is set in 2021, 31 years after World War III. Filicia Epstein, a bionics genius, came to Sabano and Sergent Mutou was ordered to protect her. Searching for her only brother, Lyon, Filicia encountered with 1019, a cybernoid, who directed them to the phantom city, OZ, which is a shelter created by Lyon. As the story unfolds, they gradually realised what 'OZ' actually was… Very loosely based on some parts of *The Wizard of Oz*. Two OVAs were made. --- - **Won the 24th Seiun Award for Best Comic in 1993**

3.8 (22)

Chapter 32.2

3 years ago
Award Winning Survival Post-Apocalyptic Military Thriller Sci-Fi Action Psychological Romance Comedy Adventure Drama Mystery Tragedy
Persona: Crime & Punishment

This story is a spin-off to the Persona 2 duology of games by Atlus starring a young man named Kazumi Kiba. Kazumi thought he was good friends with a boy he had known for ten years, Rihito. One day, while they were out in town together looking for a shop selling masks for their school's masquerade ball, Rihito suddenly disappears. Kazumi drops out of school and starts looking for him, and will soon set foot in a totally new world.

4.0 (28)

Chapter 18

3 years ago
Sci-Fi Action Psychological Adventure Philosophical Slice of Life Mystery
The Maiden of the Rose Mansion

Ikeda's manga debut. In front of a mansion where roses blossom, Tomoko and her brother Kenichiro meet a mysterious girl. She looks interested in them but vanish each time they see her.

3.2 (25)

Chapter 1

3 years ago
Oneshot Ghosts School Life Supernatural Romance Comedy Drama Slice of Life Mystery Tragedy
Aria on the Holy String

Within the austere confines of a grand house, the beguiling story of a troubled boy, his disengaged sister, and their perpetually infirm mother begins to unfold... Serialised in GARO 1993-06

Oneshot Music Historical Psychological Philosophical Drama Mystery
Montage

One day, 10-year-old Yamato and his friend Miku discover a man in a back alley who's suffering from vicious stab wounds. The man recognizes Yamato, and uses his last breath to share a secret with the children: Yamato's father was the perpetrator of a bank robbery that is known throughout the country as the most puzzling unsolved crime of the 20th century. He warns them to "never trust anyone." Miku makes Yamato swear to keep the man's final words a secret. A few days later, Yamato's father is found dead, and the boy is taken in by Miku's family. The death is ruled as an accident, but Yamato has his doubts. Six years later, Yamato still can't stop wondering about the incidents, and resolves to take action.

4.0 (148)

Chapter 193

4 years ago
Action Psychological Crime Drama Mystery Tragedy
Ode to Kirihito

A promising young doctor, Kirihito Osanai visits a remote Japanese mountain village to investigate the source of the latest medical mystery. While he ends up traveling the world to discover what it takes to be cured of such a disease, a conspiracy back home attempts to explain away his absence. Hinging upon his fate are those of his loved ones: an unstable childhood friend and colleague trapped between factions of the medical establishment that nurtured him; a fiancee emotionally transformed by Kirihito’s mysterious disappearance; and a stranger who becomes his guardian angel, a sensual circus-act performer with volatile psychological secrets. [Official English](https://kodansha.us/series/ode-to-kirihito/) --- **Volumes 31-34 of the Osamu Tezuka Complete Works**

4.0 (26)

Chapter 20.1

4 years ago
Animals Survival Mafia Sexual Violence Gore Police Thriller Psychological Romance Comedy Crime Adventure Philosophical Drama Medical Horror Slice of Life Mystery Tragedy
Chars Daily Life

The day after a red shooting star fell to Earth, a man wakes up to find himself in an apartment with no memory of what happened up until that moment. Could he be "Char"? Or is he just someone who happens to look like him? One mystery seems to lead to another! A hillarious spinoff to Neo Gundam! (Via ComicWalker)

4.4 (122)

Chapter 75.5

4 years ago
Sci-Fi Psychological Comedy Mecha Drama Slice of Life Mystery Tragedy
Kuro Hakushaku wa Hoshi o Mederu

A Cinderella story with a twist! Esther Mayfield is a normal sixteen year old girl in 19th Century London. Except, ever since she was a little girl, she could see 'ghosts'. She lives in a small part of town and sells flowers to earn a living. She thought that she would continue to live like this forever. Until, one day, a handsome young Count appears in front of her. And he wants Esther to be his bride? Is he really the Prince Charming she has been waiting for?

3.9 (208)

Chapter 70

4 years ago
Historical Romance Fantasy Mystery
Chikita Gugu

After his whole family was eaten as a child, Chikita is the sole survivor of the legendary Gugu clan. Now he's a teenager and people are coming to him for help, even though he has no training or ability! Yet he's not alone. Laa Lam Delal, the yokai who killed his family, is watching over him, waiting for him to ripen…

4.3 (42)

Chapter 21

4 years ago
Romance Drama Fantasy Mystery
Shinigami-sama ni Saigo no Onegai wo RE

Aida Shizuka was sentenced to death for murdering his whole family. As he waited for his execution to come, he was one day visited by his sister who was no longer of the living and had become a grim reaper. The two of them set up to perform the grim reaper's job of granting the "final wish", but they would soon realise that Shizuka was not the culprit behind their family's murder. What lies before them is a revenge suspense story basked in the ever-changing lies and truth.

3.6 (61)

Chapter 23

4 years ago
Psychological Drama Mystery
Cyborg 009

The World at the Brink of Self-Annihilation (from ebookjapan): Joe, a young boy, was kidnapped by mysterious men and turned into a cyborg through surgery at a secret base. He was called 009 (zero zero nine). At the base, there are fellow cyborgs with amazing abilities from 001 to 008. They were all created as prototypes for a revolutionary new product of the "Black Ghosts," merchants of death! From the war-mongering gang, the nine cyborgs and their developer, Dr. Gilmore, escape to X Island, but...? A milestone in the history of Japanese SF manga begins! --- - **Won the 7th Kodansha Children's Manga Award in 1966, which it shared with Ishinomori's other work, Mutant Sabu**

Chapter 104

4 years ago
Award Winning Office Workers Military Gore Police Thriller Sci-Fi Action Psychological Romance Comedy Crime Adventure Philosophical Drama Mystery Tragedy
Watashi ga Iutoori ni Naru

In order to save her stupid and athletic crush from getting into a college that she thinks is a scam, Mei decides to apply for it herself. But here is where things get tricky: it is a magic school.

3.5 (282)

Chapter 27

4 years ago
Romance Comedy Mystery
Scars

"Which will come first: my resignation as a teacher or burning out past my limit?" Through the day-in and day-out responsibilities of his work, Nishiya is a teacher trying his best to be kind and caring to his students. However, as the days of long, grueling work hours, complaints from parents and guardians, and attempts to guide students falls on deaf ears pass, he finds himself gradually succumbing to fatigue no matter how much he reminds himself that this is the path that he chose. Sometimes...he even loses sight of who's sake he's living for. It is on one of those days, when the school district is rocked by a string of incidents, in which stray cats are slaughtered by human hands. And among the parents and guardians, a rumor is spreading that the culprit isa student who only attends school during exam week, a student named Hayasaka--.

3.9 (52)

Chapter 2

4 years ago
Thriller Psychological Romance Boys Love Drama Mystery
Rascal Does Not Dream of Logical Witch

"There is another 'me' in this world". Futaba Rio from the science club turned into two person for some mysterious reason. Sakuta hid one of them in his house, not only that, Sakurajima-senpai said she would move into his house as well. Sakuta's vacation was completely messed up. "I hate myself" What's the secret deep in Rio's heart? --- **Links:** - [![](https://i.imgur.com/dQCXZkU.png) Official Twitter](https://twitter.com/aobuta_anime) - [Official Page (JP)](https://dengekibunko.jp/special/aobuta/#comic) - [Official Anime (JP)](https://ao-buta.com/tv/) - [Official Anime Movie (JP)](https://ao-buta.com/)

4.4 (325)

Chapter 11.2

4 years ago
Sci-Fi Psychological Romance Comedy Drama Slice of Life Mystery
Gregory Horror Show: Another World

It follows Tooru Takenotsuka, a 22 year old freeter comes to the city to follow his dreams. Thanks to his status, he is unable to find an apartment to live in until a seedy real estate agent introduces him to Gregory House.

3.7 (29)

Chapter 11

4 years ago
Psychological Comedy Horror Mystery
King ga Shinda!

3.5 (37)
Thriller Mystery
The Flowers Have Blossomed

Oneshot by @SORAji34

4.3 (298)
Comedy Slice of Life Mystery