Manga with Mystery genre:

Furohile

Kyouichi is a 25-year-old NEET who lives in his parents' house. When he isn't doing freelancer work, he has a side hobby - drawing erotic manga. His life is an ordinary one, which is precisely when things get crazy. One day, while going to the bathroom, he sees a naked women in his bath. The woman, calling herself Sayo, asserts that this is *her* house, and demands to know who Kyouichi is. What is going on?

4.4 (558)

Chapter 2

6 years ago
Romance Comedy Isekai Mystery
Demon Possession

Humanity has found the perfect energy source that gives the wielder near god-like powers. This energy source has been named "Demon". The rare individuals that have the capabilities to wield this power are known as "Mediums". To become one of the Mediums, Taichi has transferred to the Meissner School. On the first day of transferring into the school, he literally runs into an energetic girl named Nui. She is a Medium and attends the Meissner School. Taichi will require her help to become a Medium himself and survive against hostile Mediums.

3.5 (23)

Chapter 2

6 years ago
Action Drama Horror Mystery
Queen Millennia

A new discovered 10th planet, called Lametal, will collide with earth on 9th September 1999. While the impact won't affect the giant ice planet critically, earth will be destroyed. Yayoi, daughter of Lametal's queen and entrusted with the mission to abduct a large number of humans for slavery, befriends the orphaned boy Hajime and starts to question the intentions of her mother. Together with her human family and friends, she takes up the fight against Lametal and searches for a way to avoid earth's destruction.

3.4 (23)

Chapter 34

5 years ago
Survival Military Thriller Sci-Fi Action Psychological Comedy Adventure Philosophical Drama Slice of Life Mystery Tragedy
Mourning Bride

The story centers on the four brothers of the Corsano mafia family: oldest son Alan, second son Bellini, third son Chris, and fourth son Dino. One day the brothers get summoned at the family home by their grandfather, the Don of the family, just to learn of his death after arriving there. His will states that Marika, their grandfather's fiancé, will be designated to choose the successor to a certain inheritance...

3.9 (37)

Chapter 2

6 years ago
Action Drama Mystery
Angels of Death Episode.0

*Satsuriku no Tenshi prequel* As a prison counselor, Daniel Dickens is no stranger to odd encounters with inmates. But when a particularly aggressive prisoner enters his office claiming that his session with a priest left him "fulfilled," Danny, who has led an unsatisfying life, has to know more. During their meeting, Danny finds there's little he can hide from this mysterious clergyman, and when an offer comes his way, he'll have to make a decision that will change his life forever…

4.3 (56)

Chapter 13

6 years ago
Action Psychological Horror Mystery
Marginal

In the year 2999, only eleven cities still survive on Earth. The climate has changed drastically, and a biochemical apocalypse has made women extinct. For centuries, the male population of Earth has survived by depending on only one woman, called the Holy Mother, whose ova are harvested to create genetically engineered children. By now, any concept of a world in which women exist as ordinary people is long gone. Society has re-structured itself around all-male families, and relationships between men and adolescent boys have become the norm. At the beginning of Marginal, the Holy Mother is assassinated by a terrorist known as Grinja. The government in power doesn't want to start a mass panic, so it pretends that the Holy Mother has only shed her vessel, and that she will be miraculously "reborn" in the near future. The public, which is superstitious and devout, believes this easily. Only government officials know that behind the scenes, there is a frantic effort to create a being able to give birth. The manga's story revolves around Kira, who becomes involved in a three-way relationship with Grinja, the aforementioned terrorist, and Ashijin, a young man who calls himself Kira's owner. A complex plot and flawless world-building make the story irresistible, and Kira's search for freedom is as symbolic as it is gripping.

3.9 (51)

Chapter 23

6 years ago
Award Winning Reverse Harem Sexual Violence Sci-Fi Historical Psychological Boys Love Adventure Drama Fantasy Mystery
BORDER

On her first day as a police academy trainee, Haruna is assigned to keep an eye on Ishikawa Ango, a driven and resourceful detective who has recently survived a gunshot wound to the head. What Haruna doesn't know is that the incident has given Ishikawa the ability to see and communicate with spirits of the victims, making him even more determined to use his special ability to catch culprits.

4.0 (108)

Chapter 16

6 years ago
Psychological Crime Drama Mystery
Kokuhaku

If you were a teacher, what would you do if you found out that the murderers of your child happen were two of your students? Would you let their fate to be decided by the law - if you knew the law would let them get away scot-free, or would you seek revenge yourself? Between ethics and justice, which would you choose? The manga version of the popular work "Confessions."

4.1 (46)

Chapter 4

6 years ago
Psychological Crime Philosophical Drama Slice of Life Mystery Tragedy
Nightmare Express

On the seventh night where the sky is dyed in rainbow colors, there’s a legend that an invitation will be sent to the most unfortunate person in the whole country. The people of the world dubbed it “The invitation to happiness”.

3.0 (5)

Chapter 3

6 years ago
Horror Fantasy Mystery
Bremen 5

Yuzu, a girl living an idyllic life in an enclosed paradise, could not stop questioning about what might lie outside. One day, a boy named Taro invades that paradise and disrupts its peace. It turns out that the world Yuzu lives in is an experiment run by a scientist from the technopolis of Zelas. Yuzu finds herself outside, in Zelas, on Earth in the year 2155. The culture of the technopolis has lost all fear of god and is openly conducting human experiments. Yuzu, Taro, and others must find their way to a place of safety, and thus they decide to head into space.

Chapter 2

6 years ago
Sci-Fi Romance Adventure Mystery
Kenja no Ishi

The mysterious alchemist Lorenzo Lusignano, a descendant of the royal family of Cyprus, is searching for the ultimate secret of alchemy – the Philosopher’s stone “Elixir.” Rumors of this blood-red gem creep everywhere, but nobody seems to have seen it, so Lorenzo’s travels through Europe’s Renaissance are never easy. Follow him on his journey as he meets kings and queens, witches and wizards, pirates and gypsies, fairy-tale creatures and monsters, and even gods.

Chapter 22

6 years ago
Historical Adventure Drama Horror Fantasy Mystery
Aria - Dear Akari-sama (Doujinshi)

3.8 (16)
Comedy Adventure Drama Slice of Life Mystery
The Hyrule Fantasy (Famicom RPG Book)

Part of a game guide that covers 3 games (Zelda, Dragon Quest and Hydlide), each with a small manga story.

Monsters Anthology Survival Video Games Magic Supernatural Adaptation Thriller Action Comedy Adventure Drama Fantasy Mystery
The Hyrule Fantasy - Zelda Game Guide

Mini-manga from The Hyrule Fantasy strategy guide.

Oneshot Monsters Survival Video Games Adaptation Historical Action Comedy Adventure Drama Fantasy Mystery Tragedy
The Complete Legend of Zelda Encyclopedia

Covers the first 3 Zelda games: *The Legend of Zelda*, *The Adventure of Link*, and *A Link to the Past*. There's a small comic introduction for each. Only the 29 comic pages are posted here, not the 205 of the whole encyclopedia.

3.2 (11)

Chapter 3

6 years ago
Monsters Video Games Adaptation Thriller Historical Action Comedy Adventure Drama Fantasy Mystery
Arborist

As some trees in Yuzuru Kashiwagi's lush garden mysteriously start withering, he decides to consult Shida, a talented arborist. What he finds, however, is no normal disease…

3.9 (47)
Mystery
Super Danganronpa 2: Goodbye Despair Academy

Follows the game story, The events of Danganronpa 2 from Hajime Hinata's point of view.

4.2 (21)

Chapter 2

6 years ago
Psychological Drama Mystery
Yousuke no Kimyou na Sekai

20-volume anthology of short stories, from surrealism to horror, featuring Yousuke's lovely art style.

Chapter 12

6 years ago
Demons Ghosts Anthology Survival School Life Supernatural Psychological Romance Comedy Adventure Drama Horror Fantasy Slice of Life Mystery Tragedy
Kono Shima ni wa Midara de Jaaku na Mono ga Sumu

Taro Kajiura and his friends from a research group at Tonan University embarked on a trip to Ikishima Island in order to pursue the origins about Princess Kannon. At the same time, the villagers of Ikishima were holding an annual festival in which outsiders were forbidden to participate in for over 400 years. The consequences for breaking that tradition were much more severe that any of them had imagined…

3.0 (732)

Chapter 47.5

6 years ago
Drama Horror Mystery
New Danganronpa V3 Comic Anthology

WARNING: THE FOLLOWING COMIC ANTHOLOGY CONTAINS SPOILERS FOR NEW DANGARONPA V3! READ AT YOUR OWN RISK! Based on the game of the same name, a variety of authors and artists write a large offering of short stories starring the various characters featured in the game. The stories range from being lovingly heartfelt, packed full of comedy and gags or being downright evil or messed up sometimes! Note: These are NOT doujin. These are official comic anthologies licensed by Spike Chunsoft, the developers of the Danganronpa series.

4.3 (105)

Chapter 14

6 years ago
Psychological Romance Comedy Horror Mystery Tragedy
Mienai Hito-tachi

The blind girl lives with a mysterious creature that somehow protects her. But the girl was aware. The creature is "a horrible monster" Note this is a oneshot that was published in two parts.

4.4 (1259)

Chapter 2

6 years ago
Horror Fantasy Mystery
Aruosumente

A dream-like story between a king and his subjects. One night the oracle Legna dreamed of a voice that shouted "Die!" Thus, he began to search for the owner of that voice. To protect the beloved young king, the oracle begins to investigate in private. --- Legna, one of the last members of a dying-out clan of dream-seers known as 'Oracles', serves as a courtier of the childlike and (apparently) well-loved king of his country. One night, he has a prophetic dream of impending danger towards His Majesty - but is unable to discern the source of the threat. Determined to protect the young royal, Legna then begins an investigation which takes him deep into the realm where dreams and political conspiracies intertwine...

Chapter 38.5

6 years ago
Historical Psychological Drama Fantasy Mystery
Two Guys in a Garden

A collection of surreal oneshots with a garden theme. Story 1, Mansion Aquarium: A sick boy finds himself in an usual situation. Story 2, Eureka Garden: A girl with a wild imagination is enchanted by a garden. Story 3, The Garden of Me: A young wife copes with a troubled marriage. Story 4, Two Guys in a Garden: A student gets way more than he bargained for when he visits his professor’s house. Story 5, A Gardener’s Day Off: A man has a peculiar encounter on his day off from work.

4.2 (79)

Chapter 5

6 years ago
Psychological Drama Slice of Life Mystery