Manga with Mystery genre:

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Haiba Sumio is a student at a Tokyo High School with an interesting ability… He occasionally falls asleep and wakes up with premonitions of the future written out on his "Dream Diary." With this ability, Sumio helps out people in trouble before anything bad happens, until one day when his peaceful life completely changes.

3.4 (73)

Chapter 56

8 years ago
Action Psychological Comedy Adventure Drama Mystery
Alice in Borderland

Alice Ryouhei will leave high school soon, but he's trying to avoid thinking about his future. Late one night, when he's hanging out with his tough friend Karube and his silly, girl-crazy friend Chota, they see fireworks. After one blindingly bright explosion, they find themselves waking up in a different world. In this 'Borderland,' people are forced to either participate in potentially deadly games or simply die. Will Chota, Karube, and Ryouhei be able to survive this dangerous new world, and is there a way they can get back to their original lives? --- - Indonesian release by Elex Media [tankoubon (2014) and 2-in-1 (2022)]

4.5 (3227)

Chapter 64.1

8 years ago
Thriller Action Psychological Comedy Crime Adventure Isekai Drama Horror Slice of Life Mystery Tragedy
Boku to Senpai no Tekken Kousai

Japan's biggest company, the Koigakubo's daughter, Reijou Himeko has "violence-seeking" eyes. Aoyama Shuuji watches over her, employed by the Koigakubo as her bodyguard. They appear to be "Senpai" and "Shuu-chan" but perhaps… their relationship is not what it seems――

3.6 (95)

Chapter 19

8 years ago
Romance Comedy Drama Mystery
Lament of the Lamb

The members of the Takashiro family share a terrible curse: only human blood can slake their thirst. Sent away after the death of his mother, Kuzuna Takashiro remained blissfully unaware of his 'condition.' When Kazuna's teenage hormones begin to rage, his uncontrollable bloodlust suddenly rears its head…

3.9 (128)

Chapter 47

8 years ago
Psychological Romance Drama Slice of Life Mystery Tragedy
Witching Hour Zoo

Aoi Hana is a normal female high school student, though she is extremely clumsy and thus tagged as good-for-nothing. But Hana wants to change herself and decides that finding a part time job would be taking the first step in that direction. Being an animal lover, Hana's job of dreams is encountering animals day-to-day and taking care of them; the zoo sounds like the perfect place for that. So when she happens to see a job offer from a local animal park, it's settled she'll attend a job interview. When Hana arrives at the zoo, everything seems just fine. The Witching Hour Zoo might be going south, but altogether it's your regular animal park. Just a very normal zoo, one might think. But that's only until Hana gets to meet the zoo's director…

4.0 (101)

Chapter 38

8 years ago
Thriller Sci-Fi Action Comedy Adventure Drama Fantasy Slice of Life Mystery Tragedy
$100 Is Too Cheap

Petey is a bounty hunter in a time and place full of bounty hunters. The criminals are outnumbered by the bounty hunters and whenever a wanted poster is posted, it doesn't stay up for long. Except for one… there's one wanted posted with a negative bounty and no one wants to catch this criminal. But Petey is curious and she seeks the help of a mystery solver…

Historical Mystery
STEINS;GATE: The Strongest Slight Fever in History

*This is a Steins;Gate alternate story which focuses on Kurisu Makise.* The story of Steins;Gate takes place in Akihabara and is about a group of friends who have managed to customize their microwave into a device that can send text messages to the past. As they perform different experiments, an organization named SERN who has been doing their own research on time travel tracks them down and now the characters have to find a way to avoid being captured by them.

4.5 (13)

Chapter 6

8 years ago
Comedy Mystery
Book of Mononoke

From Mangaupdates: This is the story of a girl who works as a performer at sake houses, but who has a unique ability. She has a tattoo of an eye on her hand which endows her with the ability of "second sight." Though this often comes in handy, it also complicates her life. She is constantly getting involved in situations with various supernatural creatures, such as animal spirits, kappas, and more.

4.0 (58)

Chapter 31

8 years ago
Adventure Drama Horror Fantasy Mystery
Hebi Onna Hajimemashita

Collection of 19 short stories published in Ghostly Magazine Yoo over the years.

3.7 (41)

Chapter 19

8 years ago
Psychological Drama Horror Slice of Life Mystery Tragedy
+C: Sword and Cornett Appendix

A collection of side stories for +C: Sword and Cornett.

3.8 (17)

Chapter 7

8 years ago
Historical Action Adventure Drama Fantasy Mystery
11 Eyes -Tsumi to Batsu to Aganai no Shoujo-

Satsuki Kakeru lost his sister by suicide and has been living a dull life ever since then. One day, he is transported into a bizarre world "Red Night" along with his friend Minase Yuka and six other classmates. In order to survive and escape from Red Night, they must defeat six black knights in order to return home. Adaptation of the 11eyes -Tsumi to Batsu to Aganai no Shoujo- adult PC game from developer Lass. See [AnimeNewsNetwork](https://www.animenewsnetwork.com/encyclopedia/anime.php?id=10935) for TV anime. See [AnimeNewsNetwork](https://www.animenewsnetwork.com/encyclopedia/anime.php?id=11226) for OAV anime. - [Wikipedia](https://en.wikipedia.org/wiki/11eyes:_Tsumi_to_Batsu_to_Aganai_no_Sh%C5%8Djo)

3.6 (29)

Chapter 12

8 years ago
Action Romance Fantasy Mystery Tragedy
Metsuko ni Yoroshiku

Toshiura Akiko is an overweight delinquent girl who's very good at fighting, and loves to eat. She's bothered by the fact that she isn't very popular. She's also bothered by the fact that she can't remember anything that happened during 3rd year middle school.

3.6 (55)

Chapter 18

8 years ago
Comedy Mystery
Yomeiro Choice

Saku had a normal life, living with his cousin Kuran and being tormented daily by his childhood friend, Karin. That is, until the day a girl named Kiiro showed up out of nowhere claiming to be Karin's and Saku's daughter from the future. Convinced she will disappear from existence unless Saku and Karin get married, she makes life a lot more complicated for everyone. Things only get crazier when Hiiro, a girl claiming to be Kuran's and Saku's daughter from a different timeline in the future, appears with the goal of getting Saku together with his cousin Kuran. Saku is suddenly faced with a dilemma: whom does he choose as his wife, and which daughter does he save from disappearing into nothing?

3.8 (480)

Chapter 41

8 years ago
Romance Comedy Slice of Life Mystery
Invisible Girl in Love

**1) The Restaurant of Many Orders** (Soko wa Chuumon no Ooi Ryouriten) A young woman frequents a certain French bistro. She would really enjoy the food they serve if only it weren't for the bossy chef owner. "You may not like me, but I love your food." **2) Invisible Girl in Love** (Toumei Ningen no Koi) A story about a socially awkward girl who's kept to herself for so long that she may as well be invisible to her classmates. Then, one day, she falls in love. **3) Matryoshka** A sweet analogy of the Russian doll: Matryoshka. As each doll is opened up to give another one, so do each memory containing his feelings towards her. **4) The Selfish Couple** **5) Drops.** A series of interconnected vignettes depicting how something as ordinary as rain can alter the course of people's lives.

4.1 (150)

Chapter 5

8 years ago
Psychological Romance Comedy Drama Slice of Life Mystery Tragedy
Merikuron no Namida

What circumstances might drive someone to create a clone that copies even their memories? A replacement so perfect that even the clone won't realize he's a clone? Nanako once took Louie up on his offer and had him create the perfect replica of herself; now she stays at his side, witness to the mericlones that he creates. Beyond the stories of the individuals he "saves", who exactly is this man playing god, and why does he do it?

3.5 (16)

Chapter 10

8 years ago
Psychological Romance Drama Slice of Life Mystery
Yu-Gi-Oh! GX

Years have passed after Yugi's adventures and now it's Yuki Judai's turn. Yuki Judai is a new student in the school Duel Academy, a school dedicated to teach duelist the basics and advanced techniques. Judai is determined to be world's #1 duelist, accepting challenges from his rivals (and friends). Although the manga is based on the anime, the story is really different and unrelated. [Official English](https://www.viz.com/read/manga/yu-gi-oh-gx/all)

4.2 (98)

Chapter 44

8 years ago
Thriller Sci-Fi Action Psychological Comedy Adventure Drama Fantasy Slice of Life Mystery Tragedy
Death Note: C-Kira-hen

A one chapter sequel of the Death Note manga which tells what happened 3 years after it all ended.

3.6 (351)
Psychological Drama Mystery Tragedy
Death Note: L FILE No. 15

Special one-shots published in Matsuyama Kenichi's Photobook

4.0 (79)
Comedy Mystery
13 Club

If you could find out a little something about the future, what would you do? Get rich off of the stock market? Use the media to become famous as a prophet? Or…

3.5 (40)

Chapter 11

8 years ago
Psychological Drama Horror Mystery
6 no Trigger

A unique take on the 'assassin-for-hire' story, as the assassin 'Tsubame' actually is four different people with four different modes to kill. Penguin is a small quiet kid who has beastly sniper skills, Washi (Owl) has a huge gattling gun grafted to his shoulder to mow down his enemies for the sake of 'justice', Suzume the cute girl who wields dual pistols, and of course Tsubame himself who prefers huge rifles and martial arts. The four have a mechanical arm which when switched allows one of the others to take control. How did Tsubame end up this way? What is the secret of the arm? You'll have to read to find out.

3.6 (55)

Chapter 20

8 years ago
Action Comedy Drama Mystery Tragedy
The Looming Figure

A boy who worries about his height fears an impossibly tall presence in his home. From the author of "Haven't you Heard? I'm Sakamoto."

3.9 (96)
Horror Mystery
Gedara

A young boy inherits an old house, but it's not without a previous tenant. He just wants to live by himself, and with the help of his tenant's…peculiar…talents, he finds a means to that end. But sometimes, the price is steep indeed…

4.1 (150)
Comedy Horror Mystery
Abara

When a creature attacks the city, a man with strange powers reluctantly stands to fight… but a shadowy government organization has unfinished business with him. Abara is set in a dystopian world, filled with large structures. The story revolves around creatures known as Gaunas, Gaunas are people who can shape bone like armor and weaponry around themselves through transformation. The transformation begins around the spine and then shapes layered armor. The story focuses on one such Gauna known as Kudou Denji (though he uses Itou Denji as a fake name earlier). Volume 2 includes the oneshot Digimortal.

3.8 (621)

Chapter 11.6

1 year ago
Thriller Sci-Fi Action Psychological Adventure Drama Horror Mystery
Chronos - DEEP

Since the death of his family in a mysterious fire, Nanasawa Io has lived as an outcast. Students at his school fear him and animals around him soon begin popping up dead. This brings about an investigation into Io by a group known as the Titans. The Titans' goal is to hunt down and destroy Kagetsuki- people who have become possessed by malicious shadows. However, what the Titans soon discover about Io isn't what they expected.

4.0 (40)

Chapter 25

8 years ago
Action Drama Mystery