Manga with Mystery genre:

Gokuto Jihen

Based on the horror game by Rinne-dou. "Capture the deceased one." Under these instructions, Kirishima heads off to a closed-down school where ghost stories dwell――

4.3 (10)

Chapter 0.5

6 years ago
Action Horror Mystery
X-DAY

A collection of four dark Tamura Yumi oneshots from the early 1990s. "X-DAY": a giant zelkova tree stands watch over the misbegotten lives of the humans around it. "Four Women": an elderly servant describes the circumstances of her master's death. "Who Did She Kill?": a detective seeks to determine the circumstances around a woman found covered in blood. "The Man We Took In": a family is thrown into chaos by the arrival of a mysterious young man.

3.9 (39)

Chapter 4

6 years ago
Anthology School Life Psychological Drama Horror Mystery
Croa Chimera

Luca's friend Will, who is from a lower-class segment of society, has gone missing. Luca's only clue to find his friend is his fondness for a certain club in the entertainment district, where a woman named Yue performs. Will had always said they should go there together sometime. When Luca goes down alone to try to speak to Yue, though, he ends up being beaten badly. Luckily, Yue herself finds him, and takes him to her friend Takaomi to be patched up. It soon becomes clear that Will has fallen victim to a chimera sickness that is becoming common in the lower classes. Luca is determined to find his friend, and to save him.

3.8 (35)

Chapter 23

6 years ago
Action Mystery
I Want to Live On...

Mayumi is a girl who lost her parents in a car accident; unable to deal with the overwhelming sadness, hatred and anger, she wishes only to be able to stop feeling altogether. Five years later, the now 18-year-old Mayumi's sister is the first victim in a series of bizarre incidents that involve people receiving text messages indicating a certain body part, immediately after which said body part is removed - painlessly and without blood loss - from their body and disappears completely.

3.5 (52)

Chapter 9

6 years ago
Romance Drama Horror Mystery Tragedy
Ragna Chronicles

On the planet Raguna, there is a music festival. With Leader at its helm, the musical group “Karriot” is brought to life by Gaia’s organ, Freya’s guitar, Seiichiro’s mandolin, and Nathaniel’s pipe…but his pipe isn’t just any ordinary pipe! The legend says of the Clausel pipe that “If you play the pipe on the night of Pavana, the moon shall be alight as the stars dance in delight.” But what does this mean, exactly…? In Masaya Hokazono’s sci-fi fantasy done in the style of legends, these mushroom man friends encounter falling stars, destroyed moons, and the cycle of life, death, and rebirth itself!

Chapter 1

6 years ago
Music Sci-Fi Adventure Fantasy Mystery
Bungou Stray Dogs: Chopsticks and a Spoon

A side story about Akutagawa Ryuunosuke of Port Mafia and Literary Master Gourmet.

4.6 (123)
Action Drama Mystery
Amatsuki

History isn't Tokidoki's strong subject. He's even forced to do make-up work at a high-tech museum to boost his failing grades. After being attacked by a virtual reality monster and having his goggles broken, he finds himself trapped in the Edo period. Could it be real?

4.0 (61)

Chapter 156

6 years ago
Historical Comedy Adventure Drama Mystery
Black Bird

There is a world of myth and magic that intersects ours, and only a special few can see it. Misao Harada is one such person, and she wants nothing to do with magical realms. She just wants to have a normal high school life and maybe get a boyfriend. But she is the bride of demon prophecy - her blood grants incredible powers and her flesh immortality. Now the demon realm is fighting over the right to her hand…or her life! Black Bird received the 2009 Shogakukan Manga Award for shoujo manga.

4.3 (562)

Chapter 72.7

2 years ago
Action Romance Comedy Drama Fantasy Mystery
Yaochi no Ran

In "Yaochi no Ran," Kirine Yaochi, a descendant of a renowned shinobi lineage, navigates the complexities of modern Japan, balancing her family's legacy with the world's demands. As she delves into a world of intrigue and danger, Kirine must unravel secrets while guarding her own. Guided by her training and aided by unexpected allies, she discovers the true cost of loyalty. "Yaochi no Ran" offers readers a thrilling journey into the hidden world of shinobi, filled with suspense and revelations.

3.9 (30)
Action Mystery
Yggdra Silver

Wrapped in snow and ice, a country of severe winter. In the country that has lost its spring, the populace freeze, starve, and compete amongst themselves for rations to live another day. When a girl who hides in herself an earnest desire and an old knight that is wanted by the country meet in a hellish world, an adventure that will overturn the world begins. With the kingdom as their enemy, they will take back everything that was stolen. (Source: MangaUpdates)

4.3 (32)

Chapter 2

6 years ago
Action Adventure Drama Fantasy Mystery
Watashi-tachi wa Douka shiteiru

Kougetsu An, a well-established Japanese-style confectionary store where Nao's mother worked and lived is where she met Tsubaki. However, after a certain incident, Nao's mother was accused of murder and is arrested. Because of that, Nao was banned from Kougetus An. Fifteen years later, Tsubaki revisits a disapproving Nao, which make the two compete at a showdown for their skills. The hateful Tsubaki who once made Nao's life a crazy mess approached Nao later to marry him since he has yet to notice that his long-lost childhood friend is Nao. How will Nao react to this unexpected proposal?! --- Info: starting from vol.17 chapter counter is reset in each volume. **Total amount of chapters:** 87.

4.1 (122)

Chapter 5

2 years ago
Psychological Romance Drama Mystery
Illegal Rare

From the author of "Nurarihyon no Mago" comes a whole new supernatural series. Supernatural creatures live alongside humans, but these "rares" are being hunted to extinction over time. An organization is being formed to protect these rares and allow them to live their lives as they like. The starting members of this organization are few; there's the masked Fukumen, the Black Vampyr AxL and they are soon joined by the sweet-voiced mermaid Mirror. Together, they will protect the rares from the deadly hunters!

3.7 (83)

Chapter 24

6 years ago
Action Comedy Drama Horror Fantasy Mystery Tragedy
Special Task Force, the Battle Ship Yumihari

Following a temporal war that ravaged Japan, the young Shoichi, his two sisters and other children must flee their homeland by boat. During this journey, they are attacked by strange suitor samurai from the future. A girl named Shizue has her face by stolen an unknown life form. The children will be rescued by the crew of a strange battleship, the Yumihari. On board, Shoichi can only note that Shizue's face have completely healed…

3.3 (53)

Chapter 33

6 years ago
Sci-Fi Psychological Adventure Drama Fantasy Mystery
Shitabashiri

While watching educational tv show Nao-kun and his family unveil a bizarre secret about their tongues. Now they set on the journey searching for the answers.

3.6 (125)
Comedy Adventure Horror Mystery
69

Satou Atsushi isn't neglected by his family so much as ignored completely. Left to fend for himself, Atsushi fails to learn human speech and instead learns "cat language" and "Dog language" from the family pets. When he's eventually socialized with other children, his speech is stunted and his social graces leave something to be desired. But on his first day of nursery school, he meets a gloomy blonde with the same last name who seems to be a safe enough choice in a first friend. After developing a rather sizeable fixation with Satou Manato, he finds out that there his first friend is seriously ill and has a twin; Shuuto. Years later, two other friends begin school and find that there are two Satous in their class too. Two Satous who, at first glance, could easily be mistaken for twins, but there's a bit more to things than it first appears…

1.6 (8)

Chapter 8.5

6 years ago
Psychological Comedy Boys Love Drama Mystery
Kamen Rider Kuuga

A multi-taleted man named Yusuke Godai gains the power of the ancient warrior "Kuuga", and with the help of officer Kaoru Ichijo, fights the murderous monsters known as the Grongi, in order to save humanity. However, things start to turn twisted when another Kuuga-like entity appears, and the police decide to build their own anti-Grongi suit. A brand new retelling of the events from the Tokusatsu Henshin Hero Series *Kamen Rider Kuuga* and *Kamen Rider Agito*.

4.3 (60)

Chapter 8

6 years ago
Thriller Sci-Fi Action Psychological Romance Comedy Crime Superhero Adventure Drama Horror Mystery Tragedy
Dream Saga

This fantasy adventure fairy tale is based on an adorable sweet girl named Yuuki Wakasa. She's just your typical 5th grader and big sister who's responsible for her three little brothers. One day while walking home she catches a red magic stone that mysteriously falls from the sky. Yuuki soon discovers the stone's magical powers when she looks in the mirror and sees a reflection of a beautiful dark-haired girl who reveals to Yuuki the secret powers of the stone: it allows her to travel from the human world to a dream world known as Takamagahara. Yuuki then realizes that she is the 'chosen one' who must save the Sun from being destroyed in the dream world; otherwise both worlds will fall into complete darkness forever …

4.1 (9)

Chapter 27

6 years ago
Action Romance Comedy Adventure Fantasy Mystery
Kamikaze Kaitou Jeanne

By day, Kusakabe Maron is an ordinary high school girl with more than her share of problems. But by night, she is Kamikaze Kaito Jeanne, the reincarnation of Jeanne d'Arc, also known as Joan of Arc. Her mission: to hunt down demon-possessed paintings and exorcise the evil spirits! Too bad accomplishing this mission puts her into conflict with the authorities, who view her as a mysterious stranger vandalizing works of art. With only the help of angel-in-training Finn, she must survive high school during the day and battle evil by night! [Official English](https://www.viz.com/phantom-thief-jeanne)

3.9 (96)

Chapter 30.7

2 years ago
Thriller Historical Action Psychological Romance Comedy Crime Adventure Philosophical Drama Fantasy Slice of Life Mystery Tragedy
Hotel Harbor View

Two linked stories, both revolving around a deadly female assassin. In Hotel Harbour View, a Japanese expatriate in Hong Kong spends his time drinking whisky, photographing a high class prostitute and waiting for death at the hands of the assassin he knows is coming for him. In Brief Encounter, a notorious Parisian assassin is himself marked for assassination and his hunter is no stranger to him.

3.5 (45)

Chapter 3

6 years ago
Survival Office Workers Gore Thriller Action Psychological Romance Crime Philosophical Drama Slice of Life Mystery Tragedy
Wonder 3

(from DMP): Three extraterrestrials are on a mission to see if Earth is qualified to be part of the Galactic Control which is an order where only certain planets can be part of. If Earth isn't qualified then the planet will be destroyed. To progress in their mission, the three beings abduct three earth animals as disguises for themselves. With their extraordinary powers they already have, they were best known as the Wonder 3. Sentai can be translated to "task force" and a lot of Japanese anime/manga/live action shows are generally aimed at children with the main characters as protectors of Earth where they can transform and gain superpowers. Ever seen Power Rangers? That's a Super Sentai series. Wonder 3 takes place in an alternate Earth in the year 196X and the world is overrun with war and violence. The Galactic Federation consisting of all the advanced species of the universe convene to decide the future of Earth, but due to a lack of information they decide to send an elite team, Wonder 3, to observe human species for one year and determine whether or not humans are worthy of saving. Upon landing on Earth, the three members of Wonder 3 - Bokko, Nokko, and Pukko - disguise themselves as animals and come across the two Hoshi brothers who defend humanity in their own way. With a time limit of one year, what can Wonder 3 learn from the Hoshi brothers about life on Earth? [Official English](https://emanga.com/collections/osamu-tezuka/products/wonder-3?variant=2555048656917) --- **Volumes 139-141 of the Osamu Tezuka Complete Works**

3.7 (16)
Animals Survival Mafia Military Gore School Life Delinquents Aliens Thriller Sci-Fi Action Psychological Romance Comedy Mecha Crime Adventure Philosophical Drama Slice of Life Mystery Tragedy
Uncool × Dead

A high school girl that's always beckoned by death x a rich detective, teaming together to solve challenging cases!

4.3 (31)

Chapter 2

6 years ago
Thriller Crime Mystery
Mach Go Go Go

Go Mifune (AKA Speed Racer) enters races all across the world, as he gets wrapped up in international conspiracies and do-or-die situations while also dealing with the enigmatic Masked Racer X...

4.3 (15)
Ghosts Survival Mafia Magic Military Police Thriller Action Psychological Comedy Crime Sports Adventure Drama Slice of Life Mystery Tragedy
Black Magic

Originally a set of one-shots published in a doujin magazine before being picked up for serialization. It's a time in the future – a time where the creation of life itself has evolved to include biodroids named after the ancient Greeks and cyborg warriors programmed to destroy. The power struggle between the various synthetic life-forms and the humans could mean the end of all life. But there is one, named Typhon, who may be able to prevent that.

3.5 (18)

Chapter 4

6 years ago
Survival Martial Arts Post-Apocalyptic Magic Military Doujinshi Gore Police Aliens Supernatural Thriller Sci-Fi Action Psychological Romance Comedy Mecha Crime Adventure Drama Medical Fantasy Slice of Life Mystery Tragedy
After School Nightmare

Like most teenagers, Mashiro Ichijo has a secret. But Mashiro’s secret is that he’s neither fully male nor female! So far, Mashiro’s been able to live his life as a boy, but all this changes when he’s informed of a new class he must take in order to graduate from his elite prep school. To pass, he must find the “Key”…and the only way to find it is to enter into a nightmare world where his body and soul are put at the mercy of the worst kind of enemies: his classmates!

3.9 (135)

Chapter 39

6 years ago
Psychological Romance Drama Mystery Tragedy