Manga with Mystery genre:

Mega Man Zero

Meet a poor, cowardly repliroid named Zero, who's lost his memories! With the help of Lito, Zero's new friend and sidekick, Zero goes on a journey to find them and recover his past. Of course, he needs to fight his new enemies some of the time–but you have to get him to stop hiding behind Lito first.

3.7 (19)

Chapter 6.5

8 years ago
Thriller Sci-Fi Action Psychological Comedy Mecha Adventure Drama Mystery Tragedy
Cool Shock B.T.

The creator of Baoh and Jojo's Bizarre Adventure presents a manga about magic and mysteries! You'll meet him at 13:13 pm, on Friday the 13th. He'll do an uncanny intro where he plays a trick on you! And wherever he goes, trouble seems to always follow. Who is this person who creates such incidents? None other than Cool Shock BT!

3.6 (96)

Chapter 6

8 years ago
Gore Delinquents Police Psychological Comedy Crime Adventure Slice of Life Mystery
Kiriko

A small group of adults have been invited to a reunion at their old high school to remember the loss of their classmate Kiriko, after receiving a letter "From K." Not knowing who "K" is, Ryosuke, a young man with short black hair that used to know Kiriko, has to uncover the truth of Kiriko's mysterious death. As he slowly regains his memories and his fellow classmates start suddenly dying around him in the most horrific manner, he realises that it's far too late to say sorry.

3.2 (282)

Chapter 5

8 years ago
Psychological Horror Mystery Tragedy
Beautiful Boy, Great Detective, Does

Beautiful Young Men, Legendary Detectives, and Extreme Sadists. A handsome ophthalmologist investigates a murder in Tokyo in the first half of the 20th century. It was scheduled to be a short story for 3 episodes, but it was suspended after the first episode was published.

3.4 (17)
Historical Action Crime Horror Mystery
Breath of Fire: The Winged Princess

Following the events of the first Breath of Fire game, this sequel brings forth a new menace in the form of the Ice Dragons, a dragon clan secluded for a long time. With the fall of the Dark Dragons, the Ice Dragon clan decides to take their place and engage in global conquest. What is Nina going to do about it now that Ryu has gone missing?

3.9 (6)

Chapter 8

8 years ago
Monsters Video Games Magic Military Supernatural Adaptation Thriller Action Romance Adventure Drama Fantasy Slice of Life Mystery Tragedy
Zero no Shiniki

Kanzaki Rei is an avid gamer, but one day he hit rock-bottom due to his debts. During the night while sleeping, a strange phenomenon happened and sent him inside the game he previously played. A world of life and death awaits.

3.1 (20)

Chapter 2

8 years ago
Action Drama Fantasy Mystery Tragedy
Aventurier: A New Translation of Arsène Lupin

The continuing adventures of classic Arsène Lupin character created by Maurice Leblanc. The manga adapts Maurice Leblanc's novels about a gentleman thief who solves cases while outwitting both the police and criminals. The first chapter of the manga retells the first short story Leblanc published, "The Arrest of Arsène Lupin" (1905). Lupin is a Gentleman Thief and a master on disguise, during the Belle Époque years.

4.1 (7)

Chapter 5

8 years ago
Historical Adventure Mystery
Pretty Guardian Sailor Moon Short Stories

Pretty Guardian Sailor Moon Short Stories - Volume 1 is the first volume of the short story volumes released along with the shinsōban manga. Chapters: Chibiusa's Picture Diary Chapter 1 - Beware of the Transfer Student Chibiusa's Picture Diary Chapter 2 - Beware of Tanabata Chibiusa's Picture Diary Chapter 3 - Beware of Cavities Chapter 1 - The Melancholy of Mako-chan Chapter 2 - Ami-chan's First Love Chapter 3 - Rei's and Minako's Girls School Battle? The Secret Hammer Price Hall Pretty Guardian Sailor Moon Short Stories - Volume 2 is the second volume of the short story volumes released along with the shinsōban manga. Chapters: The Lover of Princess Kaguya Casablanca Memory Parallel Sailor Moon (Source: The Sailor Moon Wiki)

4.2 (42)

Chapter 7

8 years ago
Magic School Life Supernatural Action Romance Comedy Magical Girls Adventure Drama Fantasy Slice of Life Mystery
The World Ends with You

Subarashiki Kono Sekai, or It's a Wonderful World, known as The World Ends with You outside of Japan, is an action RPG for the Nintendo DS handheld video game console. It was developed by the Kingdom Hearts team, Square Enix, and Jupiter. Character designs are by Tetsuya Nomura and Gen Kobayashi. The distinctive art style is inspired by the aesthetics of Shibuya youth culture. This is a 2 chapter adaption of the game.

3.9 (34)

Chapter 2

8 years ago
Action Comedy Adventure Drama Mystery
Succeed

The state of progress is where one must look to the past in order to protect the future…but what must be done for the present? From legendary WSJ mangaka Osamu Akimoto comes a one-shot where memories are the key to understanding everything: past, present and future…

Sci-Fi Drama Mystery
Back to the Jack

Meguru is an ordinary schoolgirl on a school trip. They stop to take a break and she is determined to confess her feelings to the boy she likes, Yashiro. When they get back on the bus, however, a strange man grabs her and says that he’s bus-jacking them. He shoots Meguru for putting up a fight and she thinks, fading into oblivion, “I wish I could go back in time”. The next thing she knows, she has woken up in her bed at home and quickly finds out that it’s the day before! What in the world?

3.8 (122)

Chapter 2

8 years ago
Romance Drama Mystery
Back to the Hero

The miraculous encounter that changed my entire world.

3.8 (2)

Chapter 3

8 years ago
Romance Comedy Drama Mystery
Clock Tower GHOST HEAD

A prologue comic to HUMAN Entertainment's horror game "Clock Tower GHOST HEAD" (localized as "Clock Tower II: The Struggle Within"). A follow-up comic was released in Japan. Due to localization differences, two versions of the comic have been put up: the Ghost Head version is the original, the Struggle Within version has the US localized game differences included to make it easier for international fans to read. The comic itself was bundled in with the Clock Tower GHOST HEAD The Method to Capture Victory Guidebook and was not released outside of Japan.

3.5 (3)

Chapter 1

8 years ago
Action Psychological Adventure Horror Mystery
Gachirin ni Kiri Saku

A new transfer student has come into town, a girl with a mysterious air and black clothing who is called Inugami Sakuya. What few know is that by moonlight, she hunts and kills those possessed by "Inugami." A man can become possessed by being bitten, leading to a nighttime transformation into a beast driven to eat women. Sakuya gets no thanks for brutally ending the lives of these unfortunate men with her sword, and she is often too late to save the women they threaten. Sakuya also must deal with her own inner demons, which are all too real…

4.1 (123)

Chapter 51

8 years ago
Action Psychological Drama Horror Mystery Tragedy
Clock Tower

A comic that shows different paths of HUMAN Entertainment's panic horror adventure game: "Clock Tower". Due to the comic being released in different methods, the page ratio will be different: the Prologue chapter was bundled with the PS1 complete re-release and the First Fear chapter was included within The Method to Capture Victory Guidebook.

3.6 (8)

Chapter 2

8 years ago
Action Psychological Adventure Drama Horror Mystery Tragedy
Hells Angels

Amagane Rinne, an up-beat schoolgirl, has died. Even though she is dead, she still needs to go to school. But if she's dead, where would she go to school? In Hell, of course! But making friends in a school filled with demons isn't as easy as it sounds (and it doesn't even sound that easy)…

4.0 (98)

Chapter 21

8 years ago
Thriller Action Psychological Romance Comedy Sports Adventure Drama Horror Fantasy Slice of Life Mystery Tragedy
B.A.D. Beyond Another Darkness

B.A.D. is: Cruel and painful, Ugly and beautiful, A mysterious fantasy. Will you love her?

Chapter 7

8 years ago
Psychological Horror Mystery
Majo no Shinzou

Accompanied by a talking lantern, Mika pursues her sister on a quest to retrieve that which was stolen from her long ago. (From: MU)

4.6 (286)

Chapter 42

8 years ago
Adventure Drama Fantasy Mystery Tragedy
Grisaia no Kajitsu - Sanctuary Fellows

Mihama Academy - on the surface, a closed learning environment established to nurture students who find themselves at odds with the world around them; in actuality, an orchard-cum-prison built to preserve fruit that has fallen too far from its tree. Whatever the circumstances behind its establishment, Mihama Academy is at present home to five female students, all with their own reasons for "enrollment." For better or worse, each girl has established a routine obliging of her current situation; life moves at an idle, yet accommodating pace within the walls of Mihama. Yet with the arrival of the institute's first male student, the nearly preposterously opaque Kazami Yuuji, the students at Mihama begin to fall out of step with their predetermined rhythms. Will Yuuji prove to be the element the girls around him needed to take hold of their lives once more, or will the weight of their pasts prove too steep a wall to overcome? Based on the visual novel of the same name by Front Wing.

3.8 (99)

Chapter 13

8 years ago
Psychological Romance Comedy Drama Slice of Life Mystery Tragedy
Ghost Hunt

The decrepit building was condemned long ago, but every time the owners try to tear it down, "accidents" start to happen-people get hurt, sometimes even killed. Mai Taniyama and her classmates have heard the rumors that the creepy old high school is haunted-possibly by ghosts from the Second World War. So one rainy day they gather at the old school to tell ghost stories, hoping to attract one of the suspected spirits. No ghosts materialize, but Mai and her friends do meet Kazuya Shibuya, the handsome young owner of Shibuya Psychic Research, who's been hired to investigate paranormal activity at the school. Also at the scene are an exorcist, a Buddhist monk, a woman who can speak with the dead, and an outspoken Shinto priestess. Surely one of them will have the talents to solve this mystery!

4.6 (213)

Chapter 44

8 years ago
Psychological Comedy Drama Horror Mystery
Shuuten Unknown

The White Jewel Pin, a precious treasure, is only worth something when both halves are present. When the White Jewel Pin breaks in half, two men from different organizations become the carriers of each half. Both are determined to get the other piece. One, for freedom; the other for the master who saved him.

4.1 (51)

Chapter 31

8 years ago
Comedy Boys Love Adventure Drama Fantasy Mystery
Silver Diamond Gaiden

Side stories featuring supporting characters from Silver Diamond. The extra story elaborating on the meaning of Rakan's miracle is an absolute gem!! "Map of Darkness", which depicts the Guards' life before meeting Rakan,"The Last Shelter from the Rain", their reunion in the alternate world years after the final battle, and 9 pages of extra stories such as "The Slope of Yomotsuhira", etc. are also worth-seeing!!

4.3 (43)

Chapter 2

8 years ago
Action Comedy Boys Love Adventure Drama Fantasy Mystery
Silver Diamond

Rakan lives alone, and the plants in his garden grow so thick and fast that it seems like a jungle. One day a man, holding a gun made of wood, falls right down into his garden. He seems to come from another world, and he's searching for someone who can bring back the green into his own dark and inhospitable world.

4.6 (208)

Chapter 81

8 years ago
Action Comedy Boys Love Adventure Isekai Drama Fantasy Mystery
Touhou Bunka Shinpou ~ Alternative Facts in Eastern Utopia.

Following on the heels of Bohemian Archive in Japanese Red, Alternative Facts in Eastern Utopia is presented as Aya Shameimaru's attempt to create a tabloid magazine in the style of "Shuukan Bunshun", a notorious high-circulation tabloid published weekly in Japan. This art book, featuring articles, illustrations, interviews, comics etc., gives us a glimpse into the first issue of the "Bunbunharu Weekly", which due to various circumstances had to be cancelled right before its release.

4.5 (96)

Chapter 2

8 years ago
Historical Comedy Fantasy Slice of Life Mystery