Manga with Mystery genre:

Yami BL (Anthology)

1: Sayonara Bye-bye Mata Au Hi Made (Goodbye Until Time to Meet You Again) – Konjiki Runa 2: Ore wa Wasurenai (I'll Never Forget You) – London Pariko 3: Anemone (アネモネ) – Kizuki Jin (story) × Yamamoto Kotetsuko (art) 4: Kotori wa Tottemo Uta ga Suki (The Small Bird Likes The Song Very Much) – Takahashi Mako 5: Amnesia: Kioku Kaizan (アムネジア~記憶改竄~) – Rokusei Mitsumi (story) / Takagi Shigeyoshi (art) 6: I Will Be With You Forever – SHOOWA 7: Gesu to Abazure (下衆とあばずれ) – Takumi You 8: Houraku (崩落) – Ooshima Akiko 9: Taigan no Koi (対岸の恋) – Kuroda Kuz 10: Aoi Karte (青いカルテ) – Asou Mitsuaki

2.8 (28)

Chapter 10

8 years ago
Historical Psychological Boys Love Drama Horror Mystery Tragedy
Orochi

A series of dark, atmospheric stories that explore the twisted condition of the human soul, interconnected only by the enigmatic Orochi: a perpetually young-looking woman with mysterious abilities who takes it upon herself to observe the lives of different individuals who catch her fancy, from afar. [Now available in English from Viz Media.](https://www.viz.com/orochi)

3.8 (64)

Chapter 9

8 years ago
Monsters Gore Supernatural Psychological Drama Horror Mystery Tragedy
Tajikarao

Yamagami is a small hamlet in Kyuushuu, the mountainous region in the south of Japan. Today, this village is inhabited only by old people still living in the rhythm of tradition and communion with nature. The return of one of the village youths, pursued by yakuza, will overturn life in this little world, spared until now from modernization. These sinister gangsters intend to seize this enchanted spot and trash it. Will Yamagami come to experience the harshness of the modern world?

Chapter 31

8 years ago
Mystery
12 Nin no Yasashii Koroshiya - Leo Murder Case

The main character is a fairly good looking guy who works as a Host at a very rich bar, and despite his apparent lackadaisical attitude, he remains the bar's top Host. But that's just his cover. In fact, he's also part of a secret assassination group.

3.9 (18)

Chapter 10.5

8 years ago
Action Psychological Romance Adventure Drama Mystery
Conductor

Kuchiki, a flutist, was plagued by nightmares every night that forced her to seek the help of counselor Matsuzaki. Ishikura, a police inspector, unexpectedly discovered a headless mummified body in an empty apartment and is now on the case. When Kuchiki regains her lost memories, the curtains also opens to a tragedy!

4.0 (56)

Chapter 12

8 years ago
Psychological Romance Drama Horror Mystery Tragedy
Eagle

Eagle is the story of a US Presidential election in which the Democratic Party nominee is a Japanese-American, seen largely through the eyes of a young Japanese reporter covering the campaign for a major newspaper. Official Release: - English NA release by Viz Media - Indonesian release by Level Comics

4.4 (28)

Chapter 89

8 years ago
Thriller Psychological Crime Philosophical Drama Slice of Life Mystery Tragedy
Zelda II: The Adventure of Link (SHIGOTO Daisuke)

Adventure of Link (Zelda II) adaptation by Daisuke Shigoto.

Chapter 2

8 years ago
Monsters Survival Video Games Adaptation Thriller Historical Action Romance Comedy Adventure Drama Fantasy Mystery
Boku wa Kiss de Uso wo Tsuku

Kitazono Meiko falls asleep in the library one day, only to be awakened by a kiss! She is unsure of who it was that kissed her, however, since there are multiple boys still in the library. Could it be the popular boy Shinoda-senpai? Or the super-cool Mikoshiba-senpai? The boy-next-door type Mogami? Or the cute underclassman Hachiya? Who could it be? They're all possible candidates, but which one does Meiko like the best…? Volume 1 Extras/Oneshot: - Soprano Volume 2 Extras/Oneshots: - Anna no Kami ga Nagai Ryuu - Hakka Drops

3.5 (74)

Chapter 7.2

8 years ago
Romance Mystery
Mashira

After 12 long years, a white-haired boy by the name of Iori comes back to Mashira village, the place where his childhood trauma began, only to find yet another horror awaiting him.

3.8 (28)

Chapter 23

8 years ago
Psychological Drama Horror Mystery Tragedy
AD. Police

(from ebookjapan): In the year 2027, the Advanced Police, or "AD Police", was formed to combat the violent crimes that were occurring at increasing frequency in the megalopolis of Tokyo.

3.6 (19)

Chapter 5.3

8 years ago
Survival Office Workers Gore Police Sci-Fi Action Psychological Mecha Crime Adventure Drama Mystery
Crossbone Tanteidan

That's right, don't worry–please put your minds at ease. We are this suburb's own detective agency. No matter how small the matter, our company president will personally direct every operation. You won't have to worry about the clean-up either. We'll take care of it ourselves, because… we are the Crossbone's Detectives, and that's just how we do things. Also includes "Scramble Fish" oneshot.

2.9 (5)

Chapter 5

8 years ago
Comedy Mystery
Te to Kuchi

The more a city like Edo grows wealthy the more people will gather, and as a side effect more seeds of discord can easily be found. In one hand we have Shusuke, a slacker "almost" apprentice of a merchant with a rather large mouth who is pretty skilled in conversational skills and reading into people's intentions. On the other hand we have Rie, a gracious Yamato nadeshiko who is actually an expert swordsman who has dedicated her life to her skills, and works as a benriya or hired hand / jack of all trades. What have these two in common? Well, besides their very own interesting backgrounds, the two of them are actually quite indebted towards the same person, which is Shuusuke's merchant "mentor" & Rie's landlord.

3.5 (23)

Chapter 9

8 years ago
Historical Action Romance Drama Mystery
Shinigami-sama ni Saigo no Onegai wo

Aida Shizuka is three days from being executed for cruelly murdering his family when a shinigami comes to visit him. It's his little sister Hibiki, who has come to make sure his soul goes to hell! Hibiki has another job on this trip as well, granting the final wish of a girl with heart disease, and she drags her condemned brother along with her. Soon, it becomes apparent that people are not as simple as they may seem, and even Shizuka's guilt is uncertain. Hibiki and Shizuka promise to search together for the truth about their family's death, and they won't let life, death, or trouble in the afterlife get in their way!

3.3 (101)
Psychological Drama Mystery
Jolyne, Fly High with GUCCI

A standalone one-shot published by Araki, accompanying the multi-media campaign for his window illustrations on the new collection of the fashion brand Gucci. The story is about Jolyne Kujo, who goes on a fantastic adventure when she tries to unravel the mystery behind a vintage piece she inherited from her mother’s Gucci collection.

3.7 (295)
Mystery
Goth

A rather morbid, sombre manga about two high school students, Kamiyama Itsuki and Morino Yoru, who have a peculiar interest in deaths and especially in murders that are committed near to them. Due to their strong fascination with murder and highly-developed analytical skills (along with some luck), they manage to solve the murders that have even eluded the authorities. However, acting on their own sense of justice and in self-interest, the murderers are often able to escape with the murders that they have committed. Often, it is Kamiyama that solves the cases even to the most subtle of details, but he is only interested in one thing, and that is the method by which Yoru should be killed.

3.6 (269)

Chapter 5

8 years ago
Action Psychological Comedy Horror Mystery Tragedy
Chameleon Jail

Mangaupdates: "Risk hunters" are professionals who handle jobs considered too tough for normal law enforcement, such as kidnappings, combating terrorism, and preventing murders. One man who stands above them all however is the legendary Chameleon Jail, who has the ability to manipulate his "kara" or internal human body energy in order to physically change his appearance into that of any other person. Throughout the series, he pursues several assignments on behalf of various clients given to him by Shall, a woman who runs a detective agency in New York City. All difficult, the successful completion of these assignments hinges on Jail's ability to change his appearance when the time is right. Contains 'Kaede Purple'/ 'Purple Kaede' oneshot in volume 1.

2.9 (29)

Chapter 12

8 years ago
Police Supernatural Thriller Action Psychological Comedy Adventure Philosophical Drama Mystery
Lychee☆Light Club

A group of nine boys (called the Hikari Club) are intent on making the Ultimate AI. The attractive leader of the club, Zera, is a twisted man polluting the minds of the club members to make them do whatever he pleases. Tamiya, the original founder of the club, wants to reclaim the club. Niko, the second in command, is pissed off at Jaibo, the one obsessed with Zera. They kidnap a schoolgirl, but the AI Raichi falls in love with her and she with him, and things get messy.

3.9 (527)

Chapter 9.2

8 years ago
Thriller Sci-Fi Psychological Romance Comedy Drama Horror Mystery Tragedy
Qualia the Purple

Hatou Manabu (nicknamed Gaku) has a very odd friend at school named Marii Yukari. Yukari has purple eyes and a bizarre way of looking at the world: she sees all living things as robots. This has not always worked out well for Yukari, even costing her a best friend when she was younger. However, Yukari insists that the things she says she sees is true, and her vision seems to give her insight into the abilities of others. Gaku thinks she's just weird, but she soon realizes that Yukari has unexpected talents. It seems she can fix anything, and even the police come to hear her insights. It turns out that Yukari's purple eyes are not unique in the world! However, there is one important distinction among those who see humans as other objects. Do humans appear as unimportant as objects, or do those objects appear as important as human beings? ---

4.4 (1212)

Chapter 18.1

8 years ago
Sci-Fi Psychological Girls Love Drama Mystery Tragedy
Dr. Jekyll and Mr. Hyde (Variety Art Works)

It's a manga adaptation of "Dr. Jekyll and Mr. Hyde" by Robert Louis Stevenson

3.5 (12)

Chapter 7

8 years ago
Thriller Sci-Fi Psychological Philosophical Drama Horror Mystery Tragedy
Tokage

Tokage, a soul cursed to forever wander the world, unable to rest nor to join the reincarnation cycle, is now looking for its release. This time Tokage enters the body of a newly dead girl named Yuuka, a shrine maiden. This body requires continual recharging from a highly spiritual person, whom the dead person must have had an attachment to. This person is Shinobu, a younger boy, who also lives in that shrine. Thus starts the adventures of Tokage and Shinobu in a world gone mad, amidst the chaos and carnage that gravitates to an unsent soul draw.

4.1 (136)

Chapter 21

8 years ago
Action Mystery
The Weird Storm Boy Matenro

It's about a boy with mysterious powers who transfers from school to school, fighting various monsters.

3.1 (16)

Chapter 4.2

8 years ago
School Life Supernatural Action Mystery
Out Code - Choujou Hanzai Tokumu Sousakan

A string of high school students have all been mysteriously murdered by being burned to death upon where water was evidently present. Junior High student Shirogane, a PSI (Paranormal Special Investigator) officer, takes action to solve this bizarre phenomenon. Upon questioning possible suspect Kirisaki Kirio, she discovers that he has the ability of electrocution! What other things will Shirogane unravel while dealing with this case of murders?

Chapter 6

8 years ago
Action Fantasy Mystery
Kuro Tenkousei

Two mysterious transfer students investigate a school where, in the past two months, three student have fallen to their deaths.

Psychological Boys Love Drama Mystery
Danganronpa 2: Ultimate Luck and Hope and Despair

A Super Danganronpa 2 spin-off centered around Komaeda Nagito.

4.3 (31)

Chapter 16

8 years ago
Psychological Comedy Adventure Mystery